Currently browsing: “Publications”

Pardo E., Cárcamo C., Uribe-San Martín R., Ciampi E., Segovia-Miranda F., Curkovic C., Montecino F., Holmes C., Tichauer J. E., Acuña E., Osorio-Barrios F., Castro M., Cortes P., Oyanadel C., Valenzuela D., Pacheco R., Naves R., Soza A., González A. Galectin-8 as an immunosuppressor in experimental autoimmune encephalomyelitis and a target of human early prognostic antibodies in multiple sclerosis. PLoS ONE 12(6):e0177472 (2017)

Pardo E., Cárcamo C., Uribe-San Martín R., Ciampi E., Segovia-Miranda F., Curkovic C., Montecino F., Holmes C., Tichauer J. E., Acuña E., Osorio-Barrios F., Castro M., Cortes P., Oyanadel C., Valenzuela D., Pacheco R., Naves R., Soza A., González A. Galectin-8 as an immunosuppressor in experimental autoimmune encephalomyelitis and a target of human early prognostic antibodies in multiple sclerosis. PLoS ONE 12(6):e0177472 (2017)
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Figueroa C., Gálvez-Cancino F., Oyarce C., Contreras F., Prado C., Valeria C., Cruz S., Lladser A., Pacheco R. Inhibition of dopamine receptor D3 signaling in dendritic cells increases antigen cross-presentation to CD8+ T-cells favoring anti-tumor immunity. J Neuroimmunol. 303:99-107. doi: 10.1016/j.jneuroim.2016.12.014 (2017).

Figueroa C., Gálvez-Cancino F., Oyarce C., Contreras F., Prado C., Valeria C., Cruz S., Lladser A., Pacheco R. Inhibition of dopamine receptor D3 signaling in dendritic cells increases antigen cross-presentation to CD8+ T-cells favoring anti-tumor immunity. J Neuroimmunol. 303:99-107. doi: 10.1016/j.jneuroim.2016.12.014 (2017).
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Ramachandran SA, Jadhavar PS, Miglani SK, Singh MP, Kalane DP, Agarwal AK, Sathe BD, Mukherjee K, Gupta A, Haldar S, Raja M, Singh S, Pham SM, Chakravarty S, Quinn K, Belmar S, Alfaro IE, Higgs C, Bernales S, Herrera FJ, Rai R. (2017) Design, synthesis and optimization of bis-amide derivatives as CSF1R inhibitors. Bioorg Med Chem Lett. Mar 24. pii: S0960-894X(17)30314-1. doi: 10.1016/j.bmcl.2017.03.064

Ramachandran SA, Jadhavar PS, Miglani SK, Singh MP, Kalane DP, Agarwal AK, Sathe BD, Mukherjee K, Gupta A, Haldar S, Raja M, Singh S, Pham SM, Chakravarty S, Quinn K, Belmar S, Alfaro IE, Higgs C, Bernales S, Herrera FJ, Rai R. (2017) Design, synthesis and optimization of bis-amide derivatives as CSF1R inhibitors. Bioorg Med Chem Lett. Mar 24. pii: S0960-894X(17)30314-1. doi: 10.1016/j.bmcl.2017.03.064
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Alfaro J, Pérez de Arce F, Belmar S, Fuentealba G, Avila P, Ureta G, Flores C, Acuña C, Delgado L, Gaete D, Pujala B, Barde A, Nayak AK, Upendra TVR, Patel D, Chauhan S, Sharma VK, Kanno S, Almirez RG, Hung DT, Chakravarty S, Rai R, Bernales S, Quinn KP, Pham SM, McCullagh E. Dual Inhibition of Bruton’s Tyrosine Kinase and Phosphoinositide-3-Kinase p110δ as a Therapeutic Approach to Treat Non-Hodgkin’s B Cell Malignancies. J Pharmacol Exp Ther. 2017 May;361(2):312-321. doi: 10.1124/jpet.116.238022. Epub 2017 Mar 15. PubMed PMID: 28298527.

Alfaro J, Pérez de Arce F, Belmar S, Fuentealba G, Avila P, Ureta G, Flores C, Acuña C, Delgado L, Gaete D, Pujala B, Barde A, Nayak AK, Upendra TVR, Patel D, Chauhan S, Sharma VK, Kanno S, Almirez RG, Hung DT, Chakravarty S, Rai R, Bernales S, Quinn KP, Pham SM, McCullagh E. Dual Inhibition of Bruton's Tyrosine Kinase and Phosphoinositide-3-Kinase p110δ as a Therapeutic Approach to Treat Non-Hodgkin's B Cell Malignancies. J Pharmacol Exp Ther. 2017 May;361(2):312-321. doi: 10.1124/jpet.116.238022. Epub 2017 Mar 15. PubMed PMID: 28298527.
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Braulio Valdevenito-Maturana, Jose Antonio Reyes-Suarez, Jaime Henriquez, David S. Holmes, Raquel Quatrini, Ehmke Pohl, Mauricio Arenas-Salinas. MUTANTELEC: an In Silico Mutation Simulation Platform for Comparative Electrostatic Potential Profiling of Proteins. J. of Computational Chemistry 38, 467–474 (2017).

Braulio Valdevenito-Maturana, Jose Antonio Reyes-Suarez, Jaime Henriquez, David S. Holmes, Raquel Quatrini, Ehmke Pohl, Mauricio Arenas-Salinas. MUTANTELEC: an In Silico Mutation Simulation Platform for Comparative Electrostatic Potential Profiling of Proteins. J. of Computational Chemistry 38, 467–474 (2017).
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Mark Dopson, David S Holmes, Marcelo Lazcano, Timothy J McCredden, Kieran T Mulroney, Elizabeth LJ Watkin. Multiple osmotic stress responses in Acidihalobacter prosperous results in a greater tolerance to chloride ions than in Acidithiobacillus ferrooxidans. Front. Microbiol. 05 January, doi.org/10.3389/fmicb.2016.02132 (2017).

Mark Dopson, David S Holmes, Marcelo Lazcano, Timothy J McCredden, Kieran T Mulroney, Elizabeth LJ Watkin. Multiple osmotic stress responses in Acidihalobacter prosperous results in a greater tolerance to chloride ions than in Acidithiobacillus ferrooxidans. Front. Microbiol. 05 January, doi.org/10.3389/fmicb.2016.02132 (2017).
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J-P Cárdenas, R. Quatrini and D. S. Holmes. Genomic and Metagenomic Challenges and Opportunities for Bioleaching: a mini-review. Res Microbiol. Sep;167(7):529-38 (2016).

J-P Cárdenas, R. Quatrini and D. S. Holmes. Genomic and Metagenomic Challenges and Opportunities for Bioleaching: a mini-review. Res Microbiol. Sep;167(7):529-38 (2016).
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Carolina González, Marcelo Lazcano, Jorge Valdés and David S. Holmes. Bioinformatic Analyses of Unique (Orphan) Core Genes of the Genus Acidithiobacillus: Functional Inferences and Use as Molecular Probes for Genomic and Metagenomic/Transcriptomic Interrogation. Front. Microbiol. 7:2035. doi: 10.3389/fmicb.2016.02035 (2016).

Carolina González, Marcelo Lazcano, Jorge Valdés and David S. Holmes. Bioinformatic Analyses of Unique (Orphan) Core Genes of the Genus Acidithiobacillus: Functional Inferences and Use as Molecular Probes for Genomic and Metagenomic/Transcriptomic Interrogation. Front. Microbiol. 7:2035. doi: 10.3389/fmicb.2016.02035 (2016).
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Jorquera R., Ortiz R., Ossandon F., Cárdenas J.P., Sepúlveda R and Holmes D. S. SinEx DB: A Database for Single Exon Coding Sequences in Mammalian Genomes. DataBase, baw095 doi:10.1093/database/baw095 (2016).

Jorquera R., Ortiz R., Ossandon F., Cárdenas J.P., Sepúlveda R and Holmes D. S. SinEx DB: A Database for Single Exon Coding Sequences in Mammalian Genomes. DataBase, baw095 doi:10.1093/database/baw095 (2016).
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Sophie R. Ullrich, Anja Poehlein, Carolina González, Judith S. Tischler, Francisco Ossandon, Rolf Daniel, David S. Holmes, Michael Schlömann, Martin Mühling. Gene loss and horizontal gene transfer contributed to the genome evolution of the extreme acidophile “Ferrovum”. Front. Microbiol. 7:797. doi: 10.3389/fmicb.2016.00797 (2016).

Sophie R. Ullrich, Anja Poehlein, Carolina González, Judith S. Tischler, Francisco Ossandon, Rolf Daniel, David S. Holmes, Michael Schlömann, Martin Mühling. Gene loss and horizontal gene transfer contributed to the genome evolution of the extreme acidophile “Ferrovum”. Front. Microbiol. 7:797. doi: 10.3389/fmicb.2016.00797 (2016).
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Juan Pablo Cardenas, Raquel Quatrini and David S. Holmes. Aerobic lineages of the oxidative stress response protein rubrerythrin emerged in an ancient microaerobic, (hyper)thermophilic environment. Front Microbiol. Nov 18;7:1822 (2016).

Juan Pablo Cardenas, Raquel Quatrini and David S. Holmes. Aerobic lineages of the oxidative stress response protein rubrerythrin emerged in an ancient microaerobic, (hyper)thermophilic environment. Front Microbiol. Nov 18;7:1822 (2016).
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J-P Cardenas, R. Quatrini and D. S. Holmes. The Genomics of Acidophiles. Chapter 11, pp 179-197 in Acidophiles, eds R. Quatrini and D. B. Johnson, Caister Academic Press, UK (2016)

J-P Cardenas, R. Quatrini and D. S. Holmes. The Genomics of Acidophiles. Chapter 11, pp 179-197 in Acidophiles, eds R. Quatrini and D. B. Johnson, Caister Academic Press, UK (2016)
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Alberto J.M. Martin, Calixto Dominguez, J. Sebastian Contreras-Riquelme, David S. Holmes, Tomas Perez-Acle. A graphlet-based metric for the comparison of dynamic Gene Regulatory Networks. Plos One. Oct 3;11(10):e0163497 (2016).

Alberto J.M. Martin, Calixto Dominguez, J. Sebastian Contreras-Riquelme, David S. Holmes, Tomas Perez-Acle. A graphlet-based metric for the comparison of dynamic Gene Regulatory Networks. Plos One. Oct 3;11(10):e0163497 (2016).
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Francisco Issotta, Pedro Galleguillos, Ana Moya-Beltrán, Carol S. Davis-Belmar, George Rautenbach, Paulo C. Covarrubias, Mauricio Acosta G., Francisco J. Ossandon, Yasna Contador, David S. Holmes, Sabrina Marín-Eliantonio, Raquel Quatrini, Cecilia Demergasso. Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile. Stand Genomic Sci. 2016 Feb 27;11:19. eCollection (2016).

Francisco Issotta, Pedro Galleguillos, Ana Moya-Beltrán, Carol S. Davis-Belmar, George Rautenbach, Paulo C. Covarrubias, Mauricio Acosta G., Francisco J. Ossandon, Yasna Contador, David S. Holmes, Sabrina Marín-Eliantonio, Raquel Quatrini, Cecilia Demergasso. Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile. Stand Genomic Sci. 2016 Feb 27;11:19. eCollection (2016).
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Sophie R. Ullrich, Anja Poehlein, Carolina González, Judith S. Tischler, Francisco Ossandon, Rolf Daniel, David S. Holmes, Michael Schlömann, Martin Mühling. Genome Analysis of the Biotechnologically Relevant Acidophilic Iron Oxidising Strain JA12 Indicates Phylogenetic and Metabolic Diversity within the Novel Genus “Ferrovum”. PLoS One. Jan 25;11(1): e0146832. doi: 10.1371 (2016).

Sophie R. Ullrich, Anja Poehlein, Carolina González, Judith S. Tischler, Francisco Ossandon, Rolf Daniel, David S. Holmes, Michael Schlömann, Martin Mühling. Genome Analysis of the Biotechnologically Relevant Acidophilic Iron Oxidising Strain JA12 Indicates Phylogenetic and Metabolic Diversity within the Novel Genus “Ferrovum”. PLoS One. Jan 25;11(1): e0146832. doi: 10.1371 (2016).
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